Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| aroB | aroC | YM304_20360 | YM304_20340 | 3-dehydroquinate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.998 |
| aroB | aroK | YM304_20360 | YM304_20350 | 3-dehydroquinate synthase. | Shikimate kinase. | 0.999 |
| aroB | efp | YM304_20360 | YM304_20380 | 3-dehydroquinate synthase. | Elongation factor P; Protein synonym:EF-P. | 0.785 |
| aroB | nusB | YM304_20360 | YM304_20390 | 3-dehydroquinate synthase. | Transcription antitermination protein NusB. | 0.665 |
| aroC | aroB | YM304_20340 | YM304_20360 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 3-dehydroquinate synthase. | 0.998 |
| aroC | aroK | YM304_20340 | YM304_20350 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Shikimate kinase. | 0.983 |
| aroC | efp | YM304_20340 | YM304_20380 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Elongation factor P; Protein synonym:EF-P. | 0.759 |
| aroC | nusB | YM304_20340 | YM304_20390 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Transcription antitermination protein NusB. | 0.633 |
| aroK | aroB | YM304_20350 | YM304_20360 | Shikimate kinase. | 3-dehydroquinate synthase. | 0.999 |
| aroK | aroC | YM304_20350 | YM304_20340 | Shikimate kinase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.983 |
| aroK | efp | YM304_20350 | YM304_20380 | Shikimate kinase. | Elongation factor P; Protein synonym:EF-P. | 0.791 |
| aroK | nusB | YM304_20350 | YM304_20390 | Shikimate kinase. | Transcription antitermination protein NusB. | 0.742 |
| aroK | rpoZ | YM304_20350 | YM304_20500 | Shikimate kinase. | DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.586 |
| efp | aroB | YM304_20380 | YM304_20360 | Elongation factor P; Protein synonym:EF-P. | 3-dehydroquinate synthase. | 0.785 |
| efp | aroC | YM304_20380 | YM304_20340 | Elongation factor P; Protein synonym:EF-P. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.759 |
| efp | aroK | YM304_20380 | YM304_20350 | Elongation factor P; Protein synonym:EF-P. | Shikimate kinase. | 0.791 |
| efp | fmt | YM304_20380 | YM304_20570 | Elongation factor P; Protein synonym:EF-P. | methionyl-tRNA formyltransferase. | 0.460 |
| efp | nusA | YM304_20380 | YM304_15880 | Elongation factor P; Protein synonym:EF-P. | Transcription elongation protein NusA; Participates in both transcription termination and antitermination. | 0.801 |
| efp | nusB | YM304_20380 | YM304_20390 | Elongation factor P; Protein synonym:EF-P. | Transcription antitermination protein NusB. | 0.794 |
| efp | nusG | YM304_20380 | YM304_07880 | Elongation factor P; Protein synonym:EF-P. | Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination. | 0.595 |
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