STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
priAProtein synonym:ATP-dependent helicase PriA; protein synonym:replication factor Y. (583 aa)    
Predicted Functional Partners:
ssb
Single-stranded DNA-binding protein; Protein synonym:helix-destabilizing protein.
   
 
 0.896
BAN02797.1
Hypothetical protein.
   
 
 0.889
coaBC
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Protein synonym:coenzyme A biosynthesis bifunctional protein CoaBC.
 
    0.859
fmt
methionyl-tRNA formyltransferase.
    0.816
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
       0.741
mfd
Transcription-repair-coupling factor; Protein synonym:ATP-dependent helicase Mfd.
 
     0.741
pheT
Protein synonym:phenylalanine--tRNA ligase beta chain.
 
  
 0.645
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Protein synonym:UDP-N-acetylmuramate dehydrogenase.
 
     0.601
gmk
Guanylate kinase.
 
    0.584
polA
DNA polymerase I.
 
  
 0.578
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.