STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phrDeoxyribodipyrimidine photo-lyase; Protein synonym:DNA photolyase; protein synonym:photoreactivating enzyme. (449 aa)    
Predicted Functional Partners:
BAN00667.1
Hypothetical protein.
 
   
 0.697
crtI
Protein synonym:phytoene desaturase.
 
  
 0.610
hrcA
Heat-inducible transcription repressor HrcA.
       0.582
crtB
Phytoene synthase.
 
   
 0.519
BAN02423.1
Hypothetical protein.
     
 0.493
BAN04344.1
Hypothetical protein.
 
  
 0.486
BAN04058.1
Putative phytoene dehydrogenase; Protein synonym:phytoene desaturase.
 
  
 0.479
ung
uracil-DNA glycosylase.
 
      0.470
BAN01917.1
Putative two-component histidine kinase.
  
 
 0.448
BAN00576.1
Putative ABC transporter permease/ATP-binding protein.
  
 
 0.421
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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