STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmEPutative ribosomal RNA small subunit methyltransferase. (232 aa)    
Predicted Functional Partners:
dnaJ
Chaperone protein DnaJ.
  
 
 0.892
prmA
Ribosomal protein L11 methyltransferase.
  
  
 0.795
hrcA
Heat-inducible transcription repressor HrcA.
  
  
 0.649
BAN02428.1
Putative DNA-binding protein.
       0.607
BAN02372.1
Putative rRNA methyltransferase.
  
  
 0.596
BAN03613.1
Hypothetical protein.
 
   
 0.573
trmD
tRNA (guanine-N(1)-)-methyltransferase.
 
  
 0.562
hemN
Putative oxygen-independent coproporphyrinogen III oxidase.
       0.539
dnaJ-2
Chaperone protein DnaJ.
  
 
 0.535
BAN02560.1
Hypothetical protein.
  
 
 0.515
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.