STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
deoCProtein synonym:deoxyriboaldolase. (230 aa)    
Predicted Functional Partners:
rbsK
Ribokinase.
   
 0.976
tkt
Transketolase.
  
 0.936
pgl/pgi
6-phosphogluconolactonase/glucose-6-phosphate isomerase.
  
 
 0.935
tal
Transaldolase.
    
 0.921
fba
Fructose-bisphosphate aldolase class II.
    
 0.918
BAN04328.1
Putative fructose-bisphosphate aldolase class I.
    
 0.910
BAN03491.1
Transketolase; Fragment.
    
 0.906
BAN03490.1
Transketolase; Fragment.
  
 
  0.905
tpiA
Triose-phosphate isomerase.
  
 0.875
rnhA
Protein synonym:RNase H.
      0.853
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.