STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN02699.1Putative DNA glycosylase. (264 aa)    
Predicted Functional Partners:
BAN01046.1
Putative DNA glycosylase.
  
  
0.932
mutM
formamidopyrimidine-DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase; Bifunctional protein.
  
  
 
0.928
polA
DNA polymerase I.
  
  
 0.829
nei-2
Putative endonuclease VIII; Protein synonym:DNA glycosylase/AP lyase Nei.
  
   
 0.779
BAN02700.1
Hypothetical protein.
       0.682
metX
Homoserine O-acetyltransferase.
       0.661
nth
Putative endonuclease III; Protein synonym:DNA-(apurinic or apyrimidinic site) lyase.
   
  
 0.599
uvrC
Protein synonym:excinuclease ABC subunit C.
  
  
 0.566
dnaQ
Putative DNA polymerase III epsilon subunit.
  
  
 0.511
recA
Protein synonym:recombinase A.
  
  
 0.493
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.