STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabDSuccinate-semialdehyde dehydrogenase. (478 aa)    
Predicted Functional Partners:
gabT
Protein synonym:GABA aminotransferase.
 
 0.941
BAN01715.1
Aminotransferase.
 
 0.941
sdhA
Succinate dehydrogenase flavoprotein subunit.
  
 0.933
sdhB
Succinate dehydrogenase iron-sulfur protein.
   
 
 0.919
gabD-2
Succinate-semialdehyde dehydrogenase.
  
  
 
0.919
BAN01026.1
HpcH/HpaI aldolase.
  
 
 0.913
sdhC
Succinate dehydrogenase cytochrome b subunit.
   
 
 0.901
gltA
Citrate synthase.
  
 0.891
BAN03698.1
Putative citrate synthase.
  
 0.891
BAN03003.1
Putative 2-oxoglutarate--ferredoxin oxidoreductase alpha subunit.
   
 0.859
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.