STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN02880.1Hypothetical protein. (243 aa)    
Predicted Functional Partners:
BAN02879.1
Putative ArsR family transcriptional regulator.
       0.774
xerC
Tyrosine recombinase XerC.
   
  
 0.767
rsgA
Putative ribosome biogenesis GTPase RsgA.
     
 0.455
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Protein synonym:5-enolpyruvylshikimate-3-phosphate synthase.
     
 0.454
BAN01231.1
Hypothetical protein.
   
  
 0.446
xerD
Tyrosine recombinase XerD.
   
  
 0.446
BAN03358.1
Putative integrase.
   
  
 0.446
speA
Arginine decarboxylase.
       0.443
BAN03152.1
Hypothetical protein.
   
    0.403
BAN02877.1
Hypothetical protein.
       0.400
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.