STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dopPup deamidase. (497 aa)    
Predicted Functional Partners:
prcA
20S proteasome alpha-type subunit.
  
 0.955
prcB
20S proteasome beta-type subunit.
 
  
 0.952
arc
Proteasome-associated ATPase.
  
 0.948
pup
Prokaryotic ubiquitin-like protein Pup.
 
  
 0.947
BAN01864.1
Hypothetical protein.
 
   
 0.669
BAN02275.1
Hypothetical protein.
  
   
 0.662
BAN02922.1
Hypothetical protein.
  
  
 0.625
pafA
Pup--protein ligase; Protein synonym:proteasome accessory factor A.
 
    
0.550
BAN00778.1
Putative Crp family transcriptional regulator.
  
  
 0.538
BAN02220.1
Putative WhiB family transcriptional regulator.
  
     0.535
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.