STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN03334.1Hypothetical protein. (439 aa)    
Predicted Functional Partners:
BAN03335.1
Putative glycosaminoglycan synthase.
 
     0.809
trmB
tRNA (guanine-N(7)-)-methyltransferase.
  
 
 0.627
rpmD
50S ribosomal protein L30.
   
   0.598
BAN02636.1
Putative RNA methyltransferase.
   
  
 0.590
truB
tRNA pseudouridine synthase B; Protein synonym:psi55 synthase.
   
  
 0.462
rsmA
Ribosomal RNA small subunit methyltransferase A; Protein synonym:16S rRNA dimethyladenosine transferase; protein synonym:S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase.
  
  
 0.460
rplJ
50S ribosomal protein L10.
   
   0.438
ugd-2
UDP-glucose 6-dehydrogenase.
       0.430
BAN04500.1
Hypothetical protein.
  
   0.429
BAN02927.1
Hypothetical protein.
  
  
 0.418
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.