STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN03779.1Putative RNA polymerase ECF subfamily sigma factor. (174 aa)    
Predicted Functional Partners:
sigC
RNA polymerase ECF subfamily sigma factor SigC.
  
   
 0.781
BAN04556.1
Putative RNA polymerase ECF subfamily sigma factor.
  
   
 0.781
BAN03777.1
Hypothetical protein.
     
 0.777
BAN03272.1
Putative RNA polymerase ECF subfamily sigma factor.
  
     0.773
BAN03778.1
Hypothetical protein.
       0.773
BAN03125.1
Putative RNA polymerase ECF subfamily sigma factor.
  
   
 0.771
BAN04343.1
Putative RNA polymerase ECF subfamily sigma factor.
  
   
 0.766
BAN03717.1
Putative RNA polymerase ECF subfamily sigma factor.
  
     0.748
BAN01300.1
Putative RNA polymerase ECF subfamily sigma factor.
  
     0.746
BAN03780.1
Hypothetical protein.
       0.714
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.