STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN03962.1Hypothetical protein. (291 aa)    
Predicted Functional Partners:
ung
uracil-DNA glycosylase.
       0.780
BAN04068.1
Putative oxidoreductase.
 
      0.596
BAN03960.1
Putative D-cysteine desulfhydrase.
       0.555
BAN03402.1
Hypothetical protein.
  
     0.456
BAN03959.1
Putative oxidoreductase.
       0.449
arsC
Protein synonym:arsenate reductase; protein synonym:protein-tyrosine phosphatase.
  
  
 0.427
katE
Catalase.
 
    0.420
mdh
Malate dehydrogenase.
  
    0.401
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.