STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsrAAnti-sigma factor. (88 aa)    
Predicted Functional Partners:
sigR
RNA polymerase ECF subfamily sigma factor.
  
 
 0.953
BAN04078.1
Putative MarR family transcriptional regulator.
  
  
 0.708
BAN04581.1
Hypothetical protein.
  
     0.668
BAN04081.1
Hypothetical protein.
       0.615
BAN02234.1
Hypothetical protein.
  
  
 0.607
tilS
Protein synonym:tRNA(Ile)-2-lysyl-cytidine synthase.
       0.597
BAN04084.1
Hypothetical protein.
  
    0.581
BAN01680.1
Hypothetical protein.
  
  
 0.562
BAN03045.1
Putative RNA polymerase ECF subfamily sigma factor.
 
 
 0.554
BAN04590.1
Putative RNA polymerase ECF subfamily sigma factor.
  
 
 0.550
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.