STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN04309.1Hypothetical protein. (303 aa)    
Predicted Functional Partners:
BAN04310.1
Putative acid--CoA ligase.
 
    
0.795
BAN04308.1
Putative GntR family transcriptional regulator.
       0.773
pfaBC
Putative omega-3 polyunsaturated fatty acid synthase PfaBC.
  
 0.614
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
    
 0.573
BAN03408.1
Putative formate dehydrogenase beta subunit.
    
 
 0.572
pfaA
Omega-3 polyunsaturated fatty acid synthase PfaA.
  
 0.535
BAN04307.1
Putative ABC transporter ATP-binding protein.
       0.530
BAN03647.1
Hypothetical protein.
   
 0.516
BAN01863.1
Hypothetical protein.
    
 0.506
BAN03458.1
Hypothetical protein.
    
 0.506
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.