STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaBReplicative DNA helicase. (487 aa)    
Predicted Functional Partners:
dnaG
DNA primase.
 
 
 0.961
dnaA
Chromosomal replication initiator protein DnaA.
   
 
 0.940
BAN03361.1
Hypothetical protein.
  
 
 0.914
ssb
Single-stranded DNA-binding protein; Protein synonym:helix-destabilizing protein.
 
 
 0.805
rpoA
DNA-directed RNA polymerase alpha subunit; Protein synonym:transcriptase alpha subunit.
 
  
 0.777
dnaN
DNA polymerase III beta subunit.
 
   
 0.726
BAN03006.1
Putative ATP-dependent DNA helicase.
 
 
 0.687
polA
DNA polymerase I.
 
  
 0.683
rplI
50S ribosomal protein L9.
  
  
 0.681
dnaE
DNA polymerase III alpha subunit.
 
 
 0.654
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.