STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_0094Outer membrane assembly lipoprotein YfiO. (250 aa)    
Predicted Functional Partners:
CALK_1269
Hypothetical protein.
   
 
 0.815
CALK_0092
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
    0.786
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
       0.781
CALK_1204
Outer membrane protein assembly complex, YaeT protein.
 
 
 0.739
CALK_1446
ABC-type transport system, substrat-binding component.
    
   0.729
CALK_0560
Patatin-like phospholipase.
  
 
 0.673
CALK_0698
Hypothetical protein.
  
     0.667
CALK_0332
Hypothetical protein.
  
 
 0.663
CALK_0997
Hypothetical protein.
  
 
 0.663
CALK_0998
Outer membrane protein/protective antigen OMA87.
  
 
 0.663
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.