STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_0197PAS/PAC sensor hybrid histidine kinase. (1043 aa)    
Predicted Functional Partners:
CALK_0199
Hypothetical protein.
 
 0.997
CALK_0325
Two-component system sensor protein.
 
0.997
CALK_0645
Multi-sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
 
0.997
CALK_1399
PAS/PAC sensor hybrid histidine kinase.
 
0.997
CALK_1734
Hypothetical protein.
0.997
CALK_0264
PAS/PAC sensor hybrid histidine kinase.
 
0.996
CALK_0644
Multi-sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
0.996
CALK_0706
PAS/PAC sensor hybrid histidine kinase.
 
0.996
CALK_2031
PAS/PAC sensor hybrid histidine kinase.
 
0.996
CALK_2274
Pas/pac sensor signal transduction histidine kinase.
 
0.996
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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