STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_0236Aspartate aminotransferase. (397 aa)    
Predicted Functional Partners:
CALK_0639
Pyruvate:feredoxin oxidoreductase.
    
 0.834
CALK_0235
Phosphoribosylformylglycinamidine synthase.
 
  
 0.786
CALK_0238
Purine nucleoside phosphorylase.
    
  0.761
CALK_0037
B12-dependent methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
 0.747
CALK_1166
Hypothetical protein.
  
 
 0.729
CALK_0988
Thioredoxin-disulfide reductase.
  
 
 0.714
CALK_2401
Amino-acid N-acetyltransferase; Belongs to the acetyltransferase family.
  
 
 0.704
CALK_2208
2-oxoglutarate:ferredoxin oxidoreductase, alpha subunit.
    
 0.701
CALK_2406
Spermine synthase.
   
 0.690
CALK_1971
acetyl-CoA carboxylase, biotin carboxyl carrier protein.
    
 0.689
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.