STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_0311Roadblock/LC7 family protein. (154 aa)    
Predicted Functional Partners:
CALK_0312
Hypothetical protein.
 
 
 0.997
CALK_1679
Hypothetical protein.
 
     0.743
CALK_1299
TonB-dependent receptor.
  
     0.545
CALK_0313
ABC transporter, substrate-binding protein.
       0.517
CALK_0315
ABC transporter, ATP-binding protein.
       0.517
CALK_0840
Hypothetical protein.
  
     0.499
CALK_1269
Hypothetical protein.
  
     0.481
CALK_0316
ABC transporter, permease protein.
       0.455
CALK_2221
Type IV pilus assembly protein PilM.
  
     0.408
CALK_2406
Spermine synthase.
  
     0.404
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.