STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_0540GCN5-related N-acetyltransferase. (166 aa)    
Predicted Functional Partners:
CALK_1122
GCN5-related N-acetyltransferase.
  
     0.728
CALK_0639
Pyruvate:feredoxin oxidoreductase.
    
  0.724
CALK_2406
Spermine synthase.
    
 0.686
CALK_2208
2-oxoglutarate:ferredoxin oxidoreductase, alpha subunit.
    
  0.667
CALK_1614
Acylphosphatase family protein.
  
 
  0.643
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.558
CALK_0538
Hypothetical protein.
       0.486
CALK_0539
Hypothetical protein.
       0.486
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
 
  
  0.478
CALK_0816
Mannose-6-phosphate isomerase.
 
  
  0.472
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.