STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_0713Glycoside hydrolase, GH8 family; Belongs to the glycosyl hydrolase 8 (cellulase D) family. (933 aa)    
Predicted Functional Partners:
CALK_0462
Chitinase, GH19 family.
  
  
 0.856
CALK_1758
Hypothetical protein.
   
 0.847
CALK_0232
Polysaccharide lyase family protein.
  
  
 0.819
CALK_0022
Glycoside hydrolase, GH5 family; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
 0.778
CALK_0695
GDSL family hydrolase.
 
 0.769
CALK_0463
Protease; Belongs to the peptidase S8 family.
  
 
 0.755
CALK_1521
Hypothetical protein.
 
 0.754
CALK_0293
Glycosyl transferase family 2.
 
 
 0.751
CALK_0032
Glycoside hydrolase, GH9 family.
  
  
  0.750
CALK_0059
Glycosyl transferase family 2.
 
 
 0.744
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.