STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_0748Lipid A export permease/ATP-binding protein MsbA. (607 aa)    
Predicted Functional Partners:
CALK_0193
ABC transporter, ATP-binding protein.
 
 
0.949
CALK_0753
ABC-type transport system involved in lipoprotein release, ATP-binding protein.
    
0.880
CALK_1443
ABC-type transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
   
0.841
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.799
CALK_1811
Pyridine nucleotide-disulfide oxidoreductase family protein; Belongs to the sulfur carrier protein TusA family.
  
 
 0.792
CALK_1398
DNA photolyase.
    
 
 0.774
CALK_1724
ABC-type transport system, lipoprotein releasing system, ATP-binding protein.
   
0.752
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
 
 0.750
CALK_2336
ATP-grasp protein.
   
 0.744
CALK_2143
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
    
 
 0.738
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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