STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_0896ABC transporter substrate-binding protein. (611 aa)    
Predicted Functional Partners:
CALK_0897
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.992
CALK_0898
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.990
CALK_0899
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.985
CALK_0901
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase componen.
 
 0.982
CALK_0891
ABC transporter substrate-binding protein.
 
  
 
0.835
CALK_2364
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.823
CALK_0639
Pyruvate:feredoxin oxidoreductase.
  
    0.818
CALK_0943
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.782
CALK_0727
Oligopeptide transport system permease protein AppC.
 
 0.771
CALK_1866
Hypothetical protein.
  
     0.692
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.