STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_0954Acetoacetate metabolism regulatory protein AtoC. (457 aa)    
Predicted Functional Partners:
CALK_0864
MCP methyltransferase/methylesterase CheR/CheB.
  
 0.900
CALK_1061
Flagellar motor switch protein FliN.
  
 
 0.887
CALK_1434
RNA polymerase sigma-54 subunit.
 
  
 0.847
CALK_0645
Multi-sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
  
 0.836
CALK_1399
PAS/PAC sensor hybrid histidine kinase.
  
 0.836
CALK_1734
Hypothetical protein.
 
 0.836
CALK_2278
Signal transduction histidine kinase.
  
0.835
CALK_0199
Hypothetical protein.
  
 0.829
CALK_1055
Fe-only hydrogenase, hydrogen sensor subunit HfsB.
 
      0.823
CALK_0264
PAS/PAC sensor hybrid histidine kinase.
 
 0.810
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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