STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_1103Geranylgeranyl reductase. (391 aa)    
Predicted Functional Partners:
CALK_2236
UbiA prenyltransferase.
 
 
 0.906
CALK_1105
Glutamate synthase, small subunit.
       0.776
CALK_1104
Glutamate synthase, large subunit.
       0.775
CALK_2406
Spermine synthase.
 
  
  0.734
CALK_2307
Geranylgeranyl reductase.
  
  
 
0.733
CALK_0827
UbiA prenyltransferase.
 
 
 0.631
CALK_2296
Squalene synthase.
  
 
 0.624
CALK_1861
CobN/magnesium chelatase.
 
  
 0.612
CALK_0931
Hypothetical protein.
  
     0.611
CALK_1954
Rubredoxin.
  
 
 0.592
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.