STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_1120Permease YjgP/YjgQ family protein. (866 aa)    
Predicted Functional Partners:
CALK_1210
ABC transporter ATP-binding protein.
 
 
 0.984
CALK_1208
Hypothetical protein.
  
 
 0.894
CALK_1118
Diguanylate cyclase.
       0.773
CALK_1119
Response regulator receiver protein.
       0.773
CALK_1372
Hypothetical protein.
 
  
 0.767
CALK_0698
Hypothetical protein.
  
     0.733
CALK_1373
Organic solvent tolerance protein OstA-like protein.
 
  
 0.731
CALK_1204
Outer membrane protein assembly complex, YaeT protein.
 
     0.714
CALK_0349
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
 0.676
CALK_1261
UDP-2,3-diacylglucosamine hydrolase.
 
     0.653
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.