STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_11681,4-dihydroxy-2-naphthoate octaprenyltransferase. (268 aa)    
Predicted Functional Partners:
CALK_1171
NADH dehydrogenase.
 
  
 0.932
CALK_1169
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
    
 0.895
CALK_0827
UbiA prenyltransferase.
     
 0.701
CALK_2236
UbiA prenyltransferase.
     
 0.701
CALK_0470
malonyl-CoA O-methyltransferase.
   
 0.672
CALK_0287
Tol-pal system-associated acyl-CoA thioesterase.
    
 0.657
CALK_1166
Hypothetical protein.
     
 0.635
CALK_1167
DoxX subfamily protein.
       0.579
CALK_1103
Geranylgeranyl reductase.
 
  
 0.558
CALK_0429
Trans-isoprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
    
 0.557
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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