STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_1846Type IV pilus retraction ATPase PilT. (369 aa)    
Predicted Functional Partners:
CALK_1848
Type IV pilus biogenesis protein PilC.
  
 0.949
CALK_1847
Type IV-A pilus assembly ATPase PilB.
 
  
0.845
CALK_1845
Type IV pilus secretin PilQ; Belongs to the bacterial secretin family.
 
   
 0.834
CALK_1041
Type IV pilus assembly protein PilC.
  
 0.787
CALK_1850
Hypothetical protein.
       0.752
CALK_0919
Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.747
CALK_1843
Hypothetical protein.
       0.741
CALK_1844
Hypothetical protein.
       0.741
CALK_1841
Tfp pilus assembly protein PilN.
       0.731
CALK_1842
Pilus assembly protein PilO.
       0.731
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.