STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_1861CobN/magnesium chelatase. (1560 aa)    
Predicted Functional Partners:
CALK_1860
Hypothetical protein.
 
  
 0.935
CALK_1859
MotA/TolQ/ExbB proton channel family domain protein.
 
    0.928
CALK_2295
ATP:corrinoid adenosyltransferase BtuR/CobO/CobP.
 
  
 0.792
hisC
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.722
CALK_0767
Hypothetical protein.
  
 0.680
CALK_0768
Hypothetical protein.
  
 0.680
CALK_0283
ATPase associated with various cellular activities (AAA superfamily).
     
 0.665
CALK_0493
Hydroxymethylbilane synthase/uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase; Belongs to the precorrin methyltransferase family.
  
  
 0.634
CALK_1954
Rubredoxin.
   
 
 0.621
CALK_1103
Geranylgeranyl reductase.
 
  
 0.612
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.