STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_2017Hypothetical protein. (268 aa)    
Predicted Functional Partners:
CALK_2016
Hypothetical protein.
       0.773
CALK_2014
Aspartate aminotransferase.
       0.701
CALK_2015
Haloacid dehalogenase-like hydrolase.
       0.701
CALK_2012
Homoserine dehydrogenase.
       0.451
CALK_2013
Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
       0.451
CALK_2011
Hypothetical protein.
       0.445
CALK_2018
Multi-sensor hybrid histidine kinase.
       0.404
CALK_2008
ATPases involved in chromosome partitioning.
       0.401
CALK_2009
parB-like partition protein; Belongs to the ParB family.
       0.401
CALK_2010
Peptidase M23.
       0.401
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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