STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_2046ABC-type transport system, permease component. (251 aa)    
Predicted Functional Partners:
CALK_2047
ABC-type transport system, ATPase component.
 
 0.984
CALK_2069
ABC transporter, ATP-binding protein.
 
 0.858
CALK_1338
ABC transporter ATP-binding protein.
  
 
 0.664
CALK_1620
ABC transporter, ATP-binding protein.
 
 
 0.664
CALK_0925
Nitroreductase.
  
  
 0.617
CALK_1339
Nitroreductase.
  
  
 0.617
CALK_2049
O-acetylhomoserine/O-acetylserine sulfhydrylase.
       0.511
gloB
Metallo-beta-lactamase family protein; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
  
     0.481
CALK_2045
Hypothetical protein.
       0.458
CALK_2070
ABC-2 type transporter, permease component.
  
  
 
0.447
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.