STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_2347N-Acyltransferase. (147 aa)    
Predicted Functional Partners:
CALK_2348
Pseudaminic acid biosynthesis-associated protein PseG.
 
 
 0.963
CALK_2346
Pseudaminic acid synthase.
 
 
 0.936
CALK_0075
Pseudaminic acid biosynthesis-associated protein PseG.
 
 
 0.829
CALK_0639
Pyruvate:feredoxin oxidoreductase.
    
  0.724
CALK_0077
N-acetylneuraminic acid (Neu5Ac) synthase.
 
 
 0.702
CALK_2112
UDP-N-acetylglucosamine 4,6-dehydratase.
 
   
 0.688
CALK_2406
Spermine synthase.
    
 0.686
CALK_2208
2-oxoglutarate:ferredoxin oxidoreductase, alpha subunit.
    
  0.667
CALK_1614
Acylphosphatase family protein.
  
 
  0.643
CALK_2344
Hypothetical protein.
       0.566
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.