node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKZ50582.1 | RpsG | SD89_05600 | SD89_01325 | Tetracycline resistance protein tetM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.910 |
AKZ50582.1 | rplB | SD89_05600 | SD89_00390 | Tetracycline resistance protein tetM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.907 |
AKZ50582.1 | rplC | SD89_05600 | SD89_00375 | Tetracycline resistance protein tetM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.907 |
AKZ50582.1 | rplP | SD89_05600 | SD89_00410 | Tetracycline resistance protein tetM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.907 |
AKZ50582.1 | rplV | SD89_05600 | SD89_00400 | Tetracycline resistance protein tetM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.918 |
AKZ50582.1 | rpsC | SD89_05600 | SD89_00405 | Tetracycline resistance protein tetM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.907 |
AKZ50582.1 | rpsJ | SD89_05600 | SD89_00370 | Tetracycline resistance protein tetM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.907 |
AKZ50582.1 | rpsL | SD89_05600 | SD89_01320 | Tetracycline resistance protein tetM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.912 |
AKZ50582.1 | rpsQ | SD89_05600 | SD89_00420 | Tetracycline resistance protein tetM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.907 |
AKZ50582.1 | rpsS | SD89_05600 | SD89_00395 | Tetracycline resistance protein tetM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.907 |
RpsG | AKZ50582.1 | SD89_01325 | SD89_05600 | 30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology. | Tetracycline resistance protein tetM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.910 |
RpsG | rplB | SD89_01325 | SD89_00390 | 30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.992 |
RpsG | rplC | SD89_01325 | SD89_00375 | 30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.990 |
RpsG | rplP | SD89_01325 | SD89_00410 | 30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.992 |
RpsG | rplV | SD89_01325 | SD89_00400 | 30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.989 |
RpsG | rpsC | SD89_01325 | SD89_00405 | 30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.998 |
RpsG | rpsJ | SD89_01325 | SD89_00370 | 30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.998 |
RpsG | rpsL | SD89_01325 | SD89_01320 | 30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
RpsG | rpsQ | SD89_01325 | SD89_00420 | 30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |
RpsG | rpsS | SD89_01325 | SD89_00395 | 30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.998 |