STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101881452Scaffold attachment factor B1-like. (875 aa)    
Predicted Functional Partners:
LOC101879554
Serine and arginine rich splicing factor 1.
   
 0.876
TRA2B
Transformer 2 beta homolog.
   
 0.744
TRA2A
Transformer 2 alpha homolog.
   
 0.739
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.670
LOC101878558
Serine and arginine rich splicing factor 2.
   
 
 0.647
LOC101881654
Small ubiquitin like modifier 3.
    
 0.602
ENSMUNP00000013345
annotation not available
    
 0.602
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 0.578
HNRNPA2B1
Heterogeneous nuclear ribonucleoprotein A2/B1.
   
 0.549
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.546
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.