STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD1Homocysteine inducible ER protein with ubiquitin like domain 1. (380 aa)    
Predicted Functional Partners:
AMFR
Autocrine motility factor receptor.
   
 
 0.715
ATF4
Activating transcription factor 4.
   
 
 0.640
ZNF622
Zinc finger protein 622.
      
 0.523
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.507
DNAJB9
DnaJ heat shock protein family (Hsp40) member B9.
   
  
 0.473
CTH
Cystathionine gamma-lyase.
      
 0.461
XBP1
X-box binding protein 1.
   
  
 0.449
FAM8A1
Family with sequence similarity 8 member A1.
    
 
 0.437
ERO1B
Endoplasmic reticulum oxidoreductase 1 beta.
      
 0.436
RNF145
Ring finger protein 145.
    
 
 0.430
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.