STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCNKCyclin K. (583 aa)    
Predicted Functional Partners:
CDK12
Cyclin dependent kinase 12.
    
 0.986
CDK13
Cyclin dependent kinase 13.
    
 0.986
CDK9
Cyclin dependent kinase 9.
   
 0.979
CNOT2
CCR4-NOT transcription complex subunit 2.
   
   0.936
LHX1
LIM homeobox 1.
    
   0.924
LHX5
LIM homeobox 5.
    
   0.924
SUPT4H1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.911
CDK7
Cyclin dependent kinase 7.
     
 0.897
CCNH
Cyclin H.
     
 0.889
CTDP1
CTD phosphatase subunit 1.
   
 
 0.882
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.