STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAPN3Calpain 3. (750 aa)    
Predicted Functional Partners:
LOC101877242
Calpastatin.
   
 0.867
CAPNS2
Calpain small subunit 2.
   
0.829
PPP1CC
Protein phosphatase 1 catalytic subunit gamma.
    
  0.653
ITSN2
Intersectin 2.
   
 
  0.634
ENSMUNP00000013996
annotation not available
    
 
 0.626
ENSMUNP00000003292
annotation not available
   
 0.609
PDCD6
Programmed cell death 6.
   
0.609
PEF1
penta-EF-hand domain containing 1.
   
0.609
SRI
Sorcin.
   
0.609
LOC101869750
BH3 interacting domain death agonist.
   
  0.585
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.