STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101874780U5 small nuclear ribonucleoprotein 200 kDa helicase. (288 aa)    
Predicted Functional Partners:
PRPF8
pre-mRNA processing factor 8.
   
 0.999
PRPF6
pre-mRNA processing factor 6.
   
 0.999
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
   
 0.999
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
SF3B3
Splicing factor 3b subunit 3.
   
 
 0.999
SNRPB
Small nuclear ribonucleoprotein polypeptides B and B1.
   
 0.998
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.998
SNRPE
Small nuclear ribonucleoprotein polypeptide E.
  
 0.998
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.998
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.998
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.