STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IRX4Iroquois homeobox 4. (485 aa)    
Predicted Functional Partners:
PBX4
PBX homeobox 4.
    
0.697
LOC101868753
PBX homeobox 3.
    
0.697
LOC101872953
PBX homeobox 1.
    
0.697
SRF
Serum response factor.
   
 
 0.655
HHEX
Hematopoietically expressed homeobox.
    
 
 0.632
TSHZ3
Teashirt zinc finger homeobox 3.
    
 0.560
TSHZ1
Teashirt zinc finger homeobox 1.
    
 0.556
TSHZ2
Teashirt zinc finger homeobox 2.
    
 0.556
KCNJ3
Potassium inwardly rectifying channel subfamily J member 3.
      
 0.528
ARID4B
AT-rich interaction domain 4B.
    
 
 0.512
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.