STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JMJD4Jumonji domain containing 4. (427 aa)    
Predicted Functional Partners:
ETF1
Eukaryotic translation termination factor 1.
    
 
 0.653
ALKBH4
alkB homolog 4, lysine demethylase.
   
  
 0.558
ALKBH1
alkB homolog 1, histone H2A dioxygenase.
   
  
 0.551
HSPBAP1
HSPB1 associated protein 1.
      
 0.526
RIOX1
Ribosomal oxygenase 1.
      
 0.524
KDM8
Lysine demethylase 8.
      
 0.523
OGFOD1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
      
 0.520
ALKBH8
alkB homolog 8, tRNA methyltransferase.
   
  
 0.459
ALKBH2
alkB homolog 2, alpha-ketoglutarate dependent dioxygenase.
      
 0.446
MCCC2
methylcrotonoyl-CoA carboxylase 2.
      
 0.439
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.