STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPATCH8G-patch domain containing 8. (1470 aa)    
Predicted Functional Partners:
LOC101869220
DEAD-box helicase 10.
    
 0.794
NOL6
Nucleolar protein 6.
    
 
 0.734
THBS2
Thrombospondin 2.
    
  0.732
THBS1
Thrombospondin 1.
    
  0.732
UTP6
UTP6 small subunit processome component.
    
 
 0.729
LOC101879457
Ribosomal RNA processing 36.
   
   0.726
BYSL
Bystin like.
    
 
 0.723
NOM1
Nucleolar protein with MIF4G domain 1.
    
   0.722
IMP3
IMP U3 small nucleolar ribonucleoprotein 3.
    
   0.722
UTP3
UTP3 small subunit processome component.
    
   0.722
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.