STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD1Chromodomain helicase DNA binding protein 1. (1787 aa)    
Predicted Functional Partners:
ARID4A
AT-rich interaction domain 4A.
   
 0.808
ARID4B
AT-rich interaction domain 4B.
   
 0.799
NIPBL
NIPBL cohesin loading factor.
   
 
 0.794
FANCM
FA complementation group M.
   
 0.763
POLR2C
RNA polymerase II subunit C.
   
 0.749
ACTR5
Actin related protein 5.
    
 0.736
RUVBL1
RuvB like AAA ATPase 1.
    
 0.735
H2AZ1
Histone H2A.Z.
    
 0.734
POLR2F
RNA polymerase II subunit F.
   
 0.726
POLR2D
RNA polymerase II subunit D.
    
 0.722
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.