STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX42DEAD-box helicase 42. (934 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
   
 0.999
SF3B3
Splicing factor 3b subunit 3.
   
 0.996
PHF5A
PHD finger protein 5A.
    
 0.989
SF3B5
Splicing factor 3b subunit 5.
    
 0.987
SF3A2
Splicing factor 3a subunit 2.
    
 0.983
SF3B4
Splicing factor 3b subunit 4.
    
 0.978
SF3B6
Splicing factor 3b subunit 6.
    
  0.955
DHX15
DEAH-box helicase 15.
  
 0.916
ZMAT5
Zinc finger matrin-type 5.
    
 0.868
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
 0.837
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.