STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101874496RP9 pre-mRNA splicing factor. (251 aa)    
Predicted Functional Partners:
DHX38
DEAH-box helicase 38.
   
 
 0.808
SNW1
SNW domain containing 1.
   
 
 0.783
PRPF8
pre-mRNA processing factor 8.
    
 
 0.781
CWC25
CWC25 spliceosome associated protein homolog.
   
 
 0.759
RBPJL
Recombination signal binding protein for immunoglobulin kappa J region like.
    
 0.751
RBPJ
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.751
SAP30L
SAP30 like.
    
 0.744
SAP30
Sin3A associated protein 30.
    
 0.744
NCOR1
Nuclear receptor corepressor 1.
    
 0.720
NCOR2
Nuclear receptor corepressor 2.
    
 0.720
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.