STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAF4SR-related CTD associated factor 4. (1073 aa)    
Predicted Functional Partners:
SETX
Senataxin.
   
 
 0.961
TRANK1
TPR and ankyrin repeat-containing protein 1-like.
   
 
 0.870
RNMT
RNA guanine-7 methyltransferase.
   
 
 0.813
LOC101879182
Nuclear cap binding protein subunit 2.
   
 
 0.790
NCBP1
Nuclear cap binding protein subunit 1.
   
 
 0.773
ENSMUNP00000015593
annotation not available
   
 
 0.767
TENT4A
Terminal nucleotidyltransferase 4A.
    
 
 0.699
TENT4B
Terminal nucleotidyltransferase 4B.
    
 
 0.699
EXOSC10
Exosome component 10.
   
 
 0.691
POLR2B
RNA polymerase II subunit B.
   
 
 0.672
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.