STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEAF1DEAF1 transcription factor. (260 aa)    
Predicted Functional Partners:
ZMYND11
Zinc finger MYND-type containing 11.
   
  
 0.538
TMEM80
Transmembrane protein 80.
      
 0.522
PHRF1
PHD and ring finger domains 1.
   
  
 0.499
HELZ
Helicase with zinc finger.
      
 0.438
HOXC4
Homeobox protein Hox-C4-like.
    
 
 0.426
DRD4
Dopamine receptor D4.
      
 0.422
ZMYND19
Zinc finger MYND-type containing 19.
      
 0.414
ENSMUNP00000011641
annotation not available
    
   0.406
CASK
Calcium/calmodulin dependent serine protein kinase.
    
   0.406
HTR2C
5-hydroxytryptamine receptor 2C.
      
 0.404
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.