STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTF1Transcription termination factor 1. (931 aa)    
Predicted Functional Partners:
POLR1E
RNA polymerase I subunit E.
    
 0.746
POLR1C
RNA polymerase I and III subunit C.
    
  0.737
TWISTNB
TWIST neighbor.
    
 0.722
LOC101878747
TATA-box binding protein associated factor, RNA polymerase I subunit D.
     
 0.719
POLR1A
RNA polymerase I subunit A.
    
 0.700
CAVIN1
Caveolae associated protein 1.
    
 0.687
POLR1B
RNA polymerase I subunit B.
   
 
 0.664
POLR2C
RNA polymerase II subunit C.
    
  0.660
GTF2H5
General transcription factor IIH subunit 5.
    
 0.659
LOC101880372
TATA-box binding protein associated factor 1.
    
 0.659
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.