STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NFIL3Nuclear factor, interleukin 3 regulated. (458 aa)    
Predicted Functional Partners:
COX5A
Cytochrome c oxidase subunit 5A, mitochondrial.
   
 0.869
LOC101879019
Chromosome unknown open reading frame, human C1orf198.
   
 0.862
COX2
Cytochrome c oxidase subunit II.
    
 0.850
COA6
Cytochrome c oxidase assembly factor 6 homolog.
   
 0.832
COX4I1
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial.
   
 0.830
ATF4
Activating transcription factor 4.
   
 0.828
COX6A1
Cytochrome c oxidase subunit 6A1, mitochondrial.
   
 0.820
COX7C
Cytochrome c oxidase subunit 7C, mitochondrial.
   
 0.817
AICDA
Activation induced cytidine deaminase.
   
 0.779
COX3
Cytochrome c oxidase subunit III.
    
 0.774
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.