STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTAR1Protein prenyltransferase alpha subunit repeat containing 1. (434 aa)    
Predicted Functional Partners:
RABGGTB
Rab geranylgeranyltransferase subunit beta.
    
 0.999
LOC101869600
CHM Rab escort protein.
   
 0.990
YKT6
YKT6 v-SNARE homolog.
    
 
 0.946
SKP1
S-phase kinase associated protein 1.
    
 
 0.901
RAB39A
RAB39A, member RAS oncogene family.
    
 0.838
GDI2
GDP dissociation inhibitor 2.
    
 0.830
RAB7B
RAB7B, member RAS oncogene family.
    
 0.824
RAB9A
RAB9A, member RAS oncogene family.
    
 0.823
RAB9B
RAB9B, member RAS oncogene family.
    
 0.823
RAB37
RAB37, member RAS oncogene family.
    
 0.769
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.