STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP19Ubiquitin specific peptidase 19. (1435 aa)    
Predicted Functional Partners:
RNF123
Ring finger protein 123.
   
 0.969
SIAH2
Siah E3 ubiquitin protein ligase 2.
    
 
 0.776
SIAH1
Siah E3 ubiquitin protein ligase 1.
    
 
 0.776
LOC101880150
Inhibitor of apoptosis protein-like.
    
 0.773
USP7
Ubiquitin specific peptidase 7.
   
 
0.753
LOC101869443
NFKB inhibitor alpha.
    
  0.736
HIF1A
Hypoxia inducible factor 1 subunit alpha.
    
 0.725
BIRC7
Baculoviral IAP repeat-containing protein 7-A.
    
 0.712
PDCD11
Programmed cell death 11.
   
  0.686
TRAF6
TNF receptor associated factor 6.
    
 0.675
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.